tags: Tuesday
—
2025-05-20
Attending: Will, Dom, Josh, Frances, Chris, Khaled, Petr, Tom, Jason, David, Jean-Marie, Kevin, Melissa, Erin
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR (Frances):
- next release: early stages
- search indexing - just index what’s new/changed. Being tested by JM
- omero-zarr-pixel-buffer with idr0166 OME-Zarr data from submitter. idr0166 is Myelin Basic Protein brain VSI Olympus slide scanner.
- OMERO:
- Petr: Seb is working on bump of OMERO.server dependencies.
- Bio-Formats
- On track for 8.2.0 release this week.
- Next week: Sonatype / OSSRH
- NGFF
- Largely quoting from the dev thread
- Zarr: ZEPs 9 (extensions naming) & 10, and Zarr-Python 3.0.8 (:exclamation:)
- pre 3.0.8 zarr-python can delete non-zarr dirs
- RFC-5: feedback rolling in on spec PR.
- Presentation & hiring season at GerBI
- Update from #techdev call
- Newcastle team started BioNGFF-Viewer
- David Stansby demo’d neuroglancer data, alignment of 2 images and code to achieve this in neuroglancer
- JM: testing OME-Zarr import into OMERO, with omero-zarr-pixel-buffer on merge-ci.
- GerBI
- Tom: grant writing and ELMI prep: workshops on data organisation and Rembi. Petr also preparing for ELMI
- Glencoe
- Community
- IDR Usage: Juan Caecedo and Wei Ouyang from CZI AI workshop on Image Analysis. Juan Caecedo: IDR cell painting datasets used to build models.
- Discussion last week on OME website “About” pages update to list maintainers, contributors to OME community tools
- Could also be driven by Events page?
- Petr: be aware that there are links for “workshops” to that page
- India outreach 16th June in Pune
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
