tags: Tuesday
—
2025-03-11
Attending: Will, Dom, JM, Khaled, Frances, Petr, Seb, Andreas, Kevin, Chris, Josh, Jason, Melissa, David, Kyle,
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR: Frances:
- Dom fixing images with missing Files from idr0108 (caused by file renaming). Image ID changes and re-annotation needed.
- Still testing next studies
- 3 submitters interested in OMERO -> IDR. Meeting arranged to discuss
- OMERO
- OMERO.web 5.29.0 released last week
- Dom: released various sub-projects required for OMERO release, walking through process with JM.
- Bio-Formats
- Melissa: starting to discuss 8.2.0 plans
- NGFF
- https://forum.image.sc/t/preprint-2024-ome-ngff-workflows-hackathon-report/109837/1
- “dev1” from challenge needed for ongoing development to allow progress without merging to mainline.
- GerBI
- https://gerbi-gmb.de/event/tim2025/ next week (Josh and Tom busy)
- TIM: ~40 of 60 workshop vendors opted in to integrate with OMERO. Upload data to Hive, gets imported into OMERO, used in Jupyter notebooks etc.
- Glencoe
- Erin at “Lab of the future” meeting
- Seb: JSON API call on Thursday this week. Plan roadmap for new features, modernisation etc.
- Seb: numpy 2 support. Planning and testing
- Chris: Django 5.2 release April 7th. Python 3.10+
- Community
- OME2025 https://docs.google.com/forms/d/1YWHn6M4yyvxtrDKFAqu7T-PPflcbZV2Yrs_Len7x7aQ/viewform?edit_requested=true
- FYI: Latest from Greg Way, makes use of idr0133: Paper (see Fig 2, IDR logo used with permission).
- Still places for https://www.bioimagingnorthamerica.org/events/ome-2025-community-meeting/
- Jason, Jean-Marie, Will, Petr attending for OME.
- Josh, Tom, Steffi attending
- Jason: Trying to get the techdev to engage on multimodal data issues.
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
