tags: Tuesday
—
2025-01-28
Attending: Will, Jason, Dom, Frances, Petr, JM, Khaled, Seb, Andreas, Kevin, Melissa, Josh, Kyle, Chris, Erin
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR Frances:
- Dom demo’d import to NFDI data stewards on Friday and recorded this. They will give it a go
- idr0159 being imported to idr-next now.
- Hyper-spectral EM data (OME-TIFFs) also expect to be included: Giepmans
- Estimate release end of Feb.
- OMERO
- openmicroscopy.org issues. Post to image.sc if no improvement soon.
- Will: discussing figure with contributors, outlining future plans, etc. Notes at https://hackmd.io/YYS7EzcSTnC_joHSl5WsNg
- Seb: status of LUTs? Will: PR updated in progress https://github.com/ome/omero-web/pull/603
- Bio-Formats
- Next release next Tuesday. Time to iron out release workflow
- NGFF
- RFC-4: another reviewer
- RFC-2 (0.5.2): ongoing discussions
- Perfection should not be enemy of the pretty damn good
- driving towards 0.6
- GerBI
- Dresden & Göttingen site visits. Talk on OME-Zarr but still lots of usage/need for OMERO.
- Issues: “history”, data movement, tracking of conversions: Samba -> s3 -> OMERO data migration issues.
- Missing next week (All Hands Meeting)
- Glencoe
- Centos7 deprecation & cleanup PRs
- Support for new distros in progress
- New YouTube playlist on pathviewer
- Community
- OME-NGFF (Tech Dev?) Consortium
- First meeting update
- Interesting mix of multimodal data types. Transcriptomics, H&E, correlative EM etc.
- Next: setup slack connections.
- “Data stories” to capture use-cases, needs.
- Data to be hosted on EBI s3, mostly public if possible
- First goals for EMBL in April
- NFDI all hands meeting next week. Josh & Frances
- ELMI workshop, likely to run OMERO wrkshp
- Global BioImaging, Pune, OMERO installation.
- iSEA will be discussing data management.
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
