tags: Tuesday —

2024-09-17

Attending: Will, Dom, Frances, JM, Petr, Khaled, Melissa, Seb, Kyle, Chris, Erin, Maadhav,

Start: 2:00 pm UK

Accepting minutes from last meeting

(2-3 minutes each)

IDR: Frances: NGFF challenge: idr0157 converted to Zarr v3. Need to check metadata (taxonomy ID)
- Will converting other studies
- OME’s deadline for conversion 20th (Friday) so we have time to organise etc by end of Sept.
OMERO: JM: Insight release yesterday
- omero-py released yesterday too
Bio-Formats Melissa: components cleanup yesterday. OME model repo has various open issues that need addressing. Will prep review for team
- Sept 30th deadline for input to next release
NGFF: Will: presentation https://docs.google.com/presentation/d/1sM0KDP3_uBgsj1fEtGQAv1UTIlaYdjZPcr9yFRWbMd0/edit#slide=id.p
- also working on viz of samples via web app and now via python notebook. Some issues with zarr v3 remote support: https://github.com/zarr-developers/zarr-python/pull/2186#issuecomment-2353397673
GerBI
Glencoe
- Tables API corner cases poorly documented: Seb to open fixes
- Erin: benchmarking with new tables API. Spatial Biology meeting last week. Transcriptomics, single cell data for testing OMERO.tables. Will write blog post…
  - JM: public tabular data would be useful for others to benchmark etc.
- SBI2 meeting next week, Boston. Will present HCS work
Community:
- Discussing installation workshop for Kobe in November

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

(20-25 minutes plus 15 minutes questions max)